Pycharm remote development in IDE gives different output compared with console output?

I am using Pycharm Professional version for remote development. I am not sure why running in IDE which is configured with remote interpreter has a different result compared with running in console connected using ssh directly on the server.  I have highlighted and italic the difference. 

The problem is I remember initially when I configured the remote development, it is working fine. But afterwhile, I found this issue. Is there any config file I need to refresh to make the output consistent? how could it happen that here is different output?

I have double checked that they use exactly the same interpreter. Could anyone tell me any solution on this?

Pycharm IDE output by right click run:

===========================================================

Using Theano backend.
ERROR (theano.sandbox.cuda): Failed to compile cuda_ndarray.cu: libcublas.so.8.0: cannot open shared object file: No such file or directory
WARNING (theano.sandbox.cuda): The cuda backend is deprecated and will be removed in the next release (v0.10). Please switch to the gpuarray backend. You can get more information about how to switch at this URL:
https://github.com/Theano/Theano/wiki/Converting-to-the-new-gpu-back-end%28gpuarray%29

WARNING (theano.sandbox.cuda): CUDA is installed, but device gpu0 is not available (error: cuda unavailable)

Console output running directly on server

===========================================================

Using Theano backend.
WARNING (theano.sandbox.cuda): The cuda backend is deprecated and will be removed in the next release (v0.10). Please switch to the gpuarray backend. You can get more information about how to switch at this URL:
https://github.com/Theano/Theano/wiki/Converting-to-the-new-gpu-back-end%28gpuarray%29

Using gpu device 0: Graphics Device (CNMeM is enabled with initial size: 50.0% of memory, cuDNN 5110)