Ignored files not being ignored in 112.49!

The EAP 112.49 linked with GIT is showing my ignored files in the change lists.  On the release 3 version this happened when I didn't have the directories specified in the settings and complained on commit because there were files included that were in my .gitignore - so I added them to both locations.

With the same project in the EAP the files are in the settings/version control/ignore and the .gitignore but the files still show up in the change list, and, there is no error raised due to the fact that they are in the .gitignore when commiting

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