Application Server source directories/jars are not indexed/used (with workaround)

I've got a maven web project (bunch of them) that uses tomcat 6.0.20. I've set up the appliation server. It all runs, but there's a problem (my pages are showing up blank), so I'm trying to debug it. The source files for the application server (tomcat) are not being shown when I step in to them.

Workaround: I added the library jars and source jars to the JDK set-up in the project structure window and i can see them.

Jamie

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