mix source and resource content root

Our (large) project setup contains a large set of folders and subfolders with a mix of source (java) and resource files (xml, properties).

Our setup before idea 13.1 was a project were we simple added the source folders containing resources to our class path (as a separate libraries containing all resouce folders)

In idea 13.1 and now 14 this is not possible anymore. The code inspection marks all my code invalid (red) because as soon as a folder is in a classpath, it is not accepted anymore as a source folder !!

How can we 'mix' folders containing both code and resource in Idea 13.1 or 14 ???

It is not an option for us to copy ALL resource at project make because there is a huge amount of resources !

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