Correct workflow existing project

I have a project where I use both Subversion control and a remote host (FTP). What is in this case the correct workflow when I want to restart my developing process?

Should I use "Create New Project from Existing Files", where I can download it form my existing FTP. And then somehow merge the Subversion?
Or should I use "Check out from Version Control" and link it to my FTP by uploading it again?

It seems a bit "off" to me, what do you use?

Schermafbeelding 2013-09-10 om 13.55.49.png
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Hmm, if I do it like this I can't use "deployment => automatic upload" without it completely uploading my whole repository to FTP :S


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