Symlinks in project directories not handled correctly - how to avoid?

A bunch of packages in my Django project are actually symlinks.

Since the update to PyCharm 2.6.1 when I am editing a file in a symlinked directory, on every Save (Cmd+S) I'm getting a message box informing me that changes have been made both in memory and on disk.

I noticed that since the update PyCharm now shows the full path to the file in the file's tab.

How can I avoid this annoying behaviour?

(PyCharm 2.6.1, MacOS 10.8.1)
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I'm really sorry about that. This will be fixed in 2.6.2.

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