VCS add ignores project structures to ignore

I set Preferences > Project structures > to ignore some directories and Preferences > Version Control > Ignores

Those directories no longer appear in project panel. I wish they did because I would like to access the notes in the Notes directory.

When I right click the directory and choose CVS > add, the files to ignore still appear in the CVS add list.

Is there a way to get CVS add to respect the project structure?

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