How to exclude files directories from quick file search, but not project folder view?

I have some build directories I occasionally like to view, but don't want them to show up when I do class or file searches using the quick search shortcuts. I know I can exclude the directories in the project structure, but then it also removed them from the right project directory sidebar. Any tips?
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This is a long standing issue with JetBrains IDEs.
Please see/vote/comment here: http://youtrack.jetbrains.com/issue/IDEA-23537 and related issues.
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