I installed Idea 12.1 this morning. As I work in Idea, an external process starts up every few seconds causing Idea to loose focus. The external process is com.intellij.rt.execution.CommandLineWrapper. I can't be sure what the process is doing or why it pops up so frequently, but it's intolerable. I will be reverting to a previous version.
OS X 10.8.3
Using the Clojure plugin.