Error messages in idea.log (6.0.1 & 6.0.2)

Beside the below errors, I would also get random assert error during editing/saving files and clicking on other things.

Essentially, this happens every time a project is opened, even after I closed the project cleanly, then reopened it. I have recreated the system directory a few times to start from scratch, but it's still happens every time:

2006-11-08 23:01:18,463 INFO - nfig.impl.AntConfigurationImpl - Start up
2006-11-08 23:01:24,051 INFO - enapi.vfs.impl.jar.JarFileInfo - Opening zip-file C:\java\IntelliJ-IDEA-6\lib\resources.jar...
2006-11-08 23:02:05,391 INFO - lij.localVcs.impl.LocalVcsImpl - purged 0 items
2006-11-08 23:02:06,643 INFO - project.impl.ConfigurationFile - Time to save C:\projects\Paradigm-60.ipr: 221
2006-11-08 23:02:08,405 INFO - project.impl.ConfigurationFile - Time to save C:\projects\Paradigm-60.iws: 1642
2006-11-08 23:02:15,626 INFO - lij.localVcs.common.CommonLVCS - enter: shutdown()
2006-11-08 23:02:15,626 INFO - lij.localVcs.impl.LocalVcsImpl - purged 0 items
2006-11-08 23:02:15,696 INFO - ellij.localVcs.impl.Repository - Repository file cache hit rate = 96%
*2006-11-08 23:02:15,696 INFO - lij.localVcs.common.CommonLVCS - Closed local history at C:\Documents and Settings\user\.IntelliJIdea60\system\vcs\Paradigm-60_ipr.c0f2af5c
2006-11-08 23:02:22,305 INFO - lij.localVcs.common.CommonLVCS - enter: load()
2006-11-08 23:02:22,305 INFO - mmon.CouldNotLoadLvcsException - Local history was incorrectly saved
2006-11-08 23:02:22,305 INFO - lij.localVcs.common.CommonLVCS -
com.intellij.localVcs.common.CouldNotLoadLvcsException: Local history was incorrectly saved*
at com.intellij.localVcs.common.CommonLVCS.d(CommonLVCS.java:219)
at com.intellij.localVcs.common.CommonLVCS.h(CommonLVCS.java:41)
at com.intellij.localVcs.common.CommonLVCS._init(CommonLVCS.java:33)
at com.intellij.localVcs.common.CommonLVCS.initialize(CommonLVCS.java:60)
at com.intellij.localVcs.common.CommonLVCS.n(CommonLVCS.java:47)
at com.intellij.localVcs.common.CommonLVCS.access$000(CommonLVCS.java:104)
at com.intellij.localVcs.common.CommonLVCS$1.run(CommonLVCS.java)
at com.intellij.ide.startup.impl.StartupManagerImpl.a(StartupManagerImpl.java:21)
at com.intellij.ide.startup.impl.StartupManagerImpl.access$100(StartupManagerImpl.java:11)
at com.intellij.ide.startup.impl.StartupManagerImpl$1.run(StartupManagerImpl.java:7)
at com.intellij.openapi.application.impl.ApplicationImpl.runReadAction(ApplicationImpl.java:267)
at com.intellij.ide.startup.impl.StartupManagerImpl.runStartupActivities(StartupManagerImpl.java:40)
at com.intellij.openapi.project.impl.ProjectManagerImpl$4.run(ProjectManagerImpl.java:1)
at com.intellij.openapi.progress.impl.ProgressManagerImpl.runProcess(ProgressManagerImpl.java:0)
at com.intellij.openapi.application.impl.ApplicationImpl$1MyThread.run(ApplicationImpl.java:6)
2006-11-08 23:02:22,395 INFO - ellij.localVcs.impl.Repository - Repository file cache hit rate = 0%
2006-11-08 23:02:22,946 ERROR - ij.localVcs.impl.LocalVcsStore - Assertion failed
java.lang.Throwable
at com.intellij.openapi.diagnostic.Logger.assertTrue(Logger.java:89)
at com.intellij.openapi.diagnostic.Logger.assertTrue(Logger.java:96)
at com.intellij.localVcs.impl.LocalVcsStore.clear(LocalVcsStore.java:11)
at com.intellij.localVcs.impl.LocalVcsStore.clearAndRecreate(LocalVcsStore.java:18)
at com.intellij.localVcs.impl.OldLvcsImplemetation.clearAndRecreate(OldLvcsImplemetation.java:161)
at com.intellij.localVcs.common.CommonLVCS.i(CommonLVCS.java:253)
at com.intellij.localVcs.common.CommonLVCS._init(CommonLVCS.java:318)
at com.intellij.localVcs.common.CommonLVCS.initialize(CommonLVCS.java:60)
at com.intellij.localVcs.common.CommonLVCS.n(CommonLVCS.java:47)
at com.intellij.localVcs.common.CommonLVCS.access$000(CommonLVCS.java:104)
at com.intellij.localVcs.common.CommonLVCS$1.run(CommonLVCS.java)
at com.intellij.ide.startup.impl.StartupManagerImpl.a(StartupManagerImpl.java:21)
at com.intellij.ide.startup.impl.StartupManagerImpl.access$100(StartupManagerImpl.java:11)
at com.intellij.ide.startup.impl.StartupManagerImpl$1.run(StartupManagerImpl.java:7)
at com.intellij.openapi.application.impl.ApplicationImpl.runReadAction(ApplicationImpl.java:267)
at com.intellij.ide.startup.impl.StartupManagerImpl.runStartupActivities(StartupManagerImpl.java:40)
at com.intellij.openapi.project.impl.ProjectManagerImpl$4.run(ProjectManagerImpl.java:1)
at com.intellij.openapi.progress.impl.ProgressManagerImpl.runProcess(ProgressManagerImpl.java:0)
at com.intellij.openapi.application.impl.ApplicationImpl$1MyThread.run(ApplicationImpl.java:6)
2006-11-08 23:02:22,956 ERROR - ij.localVcs.impl.LocalVcsStore - IntelliJ IDEA 6.0.2 Beta Build #6083
2006-11-08 23:02:22,956 ERROR - ij.localVcs.impl.LocalVcsStore - JDK: 1.5.0_09
2006-11-08 23:02:22,956 ERROR - ij.localVcs.impl.LocalVcsStore - VM: Java HotSpot(TM) Client VM
2006-11-08 23:02:22,956 ERROR - ij.localVcs.impl.LocalVcsStore - Vendor: Sun Microsystems Inc.
2006-11-08 23:02:22,956 ERROR - ij.localVcs.impl.LocalVcsStore - OS: Windows XP
2006-11-08 23:02:22,956 ERROR - ij.localVcs.impl.LocalVcsStore - Last Action: CloseProject
2006-11-08 23:02:23,156 INFO - epositoryCache.RepositoryCache - Rebuilding repository since it might be corrupted.
2006-11-08 23:02:23,547 INFO - epositoryCache.RepositoryCache - Rebuilding repository since it might be corrupted.
2006-11-08 23:02:23,918 INFO - epositoryCache.RepositoryCache - Rebuilding repository since it might be corrupted.
2006-11-08 23:02:24,749 INFO - epositoryCache.RepositoryCache - Rebuilding repository since it might be corrupted.
2006-11-08 23:02:25,159 INFO - epositoryCache.RepositoryCache - Rebuilding repository since it might be corrupted.
2006-11-08 23:02:25,530 INFO - epositoryCache.RepositoryCache - Rebuilding repository since it might be corrupted.
2006-11-08 23:02:26,151 INFO - epositoryCache.RepositoryCache - Rebuilding repository since it might be corrupted.
2006-11-08 23:02:26,551 INFO - epositoryCache.RepositoryCache - Rebuilding repository since it might be corrupted.
2006-11-08 23:02:26,932 INFO - epositoryCache.RepositoryCache - Rebuilding repository since it might be corrupted.
2006-11-08 23:02:27,413 INFO - epositoryCache.RepositoryCache - Rebuilding repository since it might be corrupted.
2006-11-08 23:02:27,773 INFO - epositoryCache.RepositoryCache - Rebuilding repository since it might be corrupted.
2006-11-08 23:02:28,154 INFO - epositoryCache.RepositoryCache - Rebuilding repository since it might be corrupted.
2006-11-08 23:02:28,504 INFO - epositoryCache.RepositoryCache - Rebuilding repository since it might be corrupted.
2006-11-08 23:02:28,855 INFO - epositoryCache.RepositoryCache - Rebuilding repository since it might be corrupted.
2006-11-08 23:02:29,215 INFO - epositoryCache.RepositoryCache - Rebuilding repository since it might be corrupted.
2006-11-08 23:02:29,636 INFO - epositoryCache.RepositoryCache - Rebuilding repository since it might be corrupted.
2006-11-08 23:02:29,986 INFO - epositoryCache.RepositoryCache - Rebuilding repository since it might be corrupted.
2006-11-08 23:02:30,337 INFO - epositoryCache.RepositoryCache - Rebuilding repository since it might be corrupted.
2006-11-08 23:02:31,168 INFO - epositoryCache.RepositoryCache - Rebuilding repository since it might be corrupted.
2006-11-08 23:02:32,039 INFO - epositoryCache.RepositoryCache - Rebuilding repository since it might be corrupted.
2006-11-08 23:02:32,620 INFO - epositoryCache.RepositoryCache - Rebuilding repository since it might be corrupted.
2006-11-08 23:02:32,950 INFO - epositoryCache.RepositoryCache - Rebuilding repository since it might be corrupted.
2006-11-08 23:02:33,351 INFO - epositoryCache.RepositoryCache - Rebuilding repository since it might be corrupted.
2006-11-08 23:02:33,682 INFO - epositoryCache.RepositoryCache - Rebuilding repository since it might be corrupted.
2006-11-08 23:02:34,012 INFO - epositoryCache.RepositoryCache - Rebuilding repository since it might be corrupted.
2006-11-08 23:02:34,342 INFO - epositoryCache.RepositoryCache - Rebuilding repository since it might be corrupted.
2006-11-08 23:02:34,683 INFO - epositoryCache.RepositoryCache - Rebuilding repository since it might be corrupted.
2006-11-08 23:02:35,013 INFO - epositoryCache.RepositoryCache - Rebuilding repository since it might be corrupted.
2006-11-08 23:02:35,344 INFO - epositoryCache.RepositoryCache - Rebuilding repository since it might be corrupted.
2006-11-08 23:02:35,674 INFO - epositoryCache.RepositoryCache - Rebuilding repository since it might be corrupted.
2006-11-08 23:02:37,437 INFO - epositoryCache.RepositoryCache - Rebuilding repository since it might be corrupted.
2006-11-08 23:02:38,038 INFO - epositoryCache.RepositoryCache - Rebuilding repository since it might be corrupted.
2006-11-08 23:02:38,378 INFO - epositoryCache.RepositoryCache - Rebuilding repository since it might be corrupted.
2006-11-08 23:02:38,719 INFO - epositoryCache.RepositoryCache - Rebuilding repository since it might be corrupted.
2006-11-08 23:02:40,071 INFO - epositoryCache.RepositoryCache - Rebuilding repository since it might be corrupted.
2006-11-08 23:02:40,421 INFO - epositoryCache.RepositoryCache - Rebuilding repository since it might be corrupted.
2006-11-08 23:02:40,772 INFO - epositoryCache.RepositoryCache - Rebuilding repository since it might be corrupted.
2006-11-08 23:02:41,122 INFO - epositoryCache.RepositoryCache - Rebuilding repository since it might be corrupted.
2006-11-08 23:02:41,473 INFO - epositoryCache.RepositoryCache - Rebuilding repository since it might be corrupted.
2006-11-08 23:02:41,823 INFO - epositoryCache.RepositoryCache - Rebuilding repository since it might be corrupted.
2006-11-08 23:03:03,655 INFO - nfig.impl.AntConfigurationImpl - Start up
2006-11-08 23:03:36,822 INFO - lij.localVcs.impl.LocalVcsImpl - purged 0 items
2006-11-08 23:03:39,466 INFO - project.impl.ConfigurationFile - Time to save C:\projects\Paradigm-60.ipr: 200
2006-11-08 23:03:39,737 INFO - project.impl.ConfigurationFile - Time to save C:\projects\Paradigm-60.iws: 231

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