I imported my settings from IDEA 5.1.2 into the latest IDEA 6.0. Now when I try to run a shell script from the Tools menu, my bash process goes into a loop in system mode, not user mode.
The tool is defined with
Parameters: -i -c "/Users/mhusby/script.sh"
Where the script file /Users/mhusby/script.sh is in my home directory, has execute permissions set, and is a simple one liner that simply does a pwd.