I can specify resource directories in IDEA, but I can't figure out how to specify filters. So, for instance, I have hbm files in directories under /WebRoot/WEB-INF/classes. So, as a result I can either include them while also getting all the java files (not desirable) or I can not include them and have the app fail to work.
Actually, it still doesn't work regardless of whether they're there or not, but I'm going one step at a time trying to get IDEA to work at the same level that Eclipse did. :)