Can't delete files by rm?

At my terminal I deleted a few files in my git project, then in PyCharm's changelist, I saw these files are displayed as gray, and after i right click on the menu the 'commit' command is disabled. I remember in the Community version, I can delete files from hard drive, then I can commit those deleted files in PyCharm, to complete the deletion of the files. 

 

Why I can't 'commit' the deleted files in Pycharm Professional? 

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Is the commit button also disabled? What happens when you click on it? 

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Yes. The 'commit' button works and thanks.

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