Unable to index file inside of a Jar with $

Problem:

I set up a workflow to have Scrooge (https://github.com/twitter/scrooge) compile thrift files into Finagle files, bundle the generated files into a JAR, and have my project depend on the JAR. My project compiles correctly, but Intellij is unable to index files containing $

If I hack a bash script to rename the file and class to exclude the $, Intellij will correctly index the source file.

An example repo using Bazel can be found here: 

https://github.com/KaoruDev/intellij-dollar-sign-bug