Webstorm automatic imports uses typescript build folder instead of src folder

I am currently using Webstorm to work on a larger project which is made up of smaller typescript projects.
The directory structure is something like this:

Clients
├- tsconfig.json
└- Packages
   ├- Core
   | ├-┬ src
   | | └- MyModule.ts
   | └-┬ dist
   |   ├- MyModule.js
   |   └- MyModule.d.ts
   └┬ Web
    └-┬ src
      └- WebComponent.tsx

Core/src contains my module where Core/dist contains my build.
When I auto-import a module on Web/src/WebComponent.tsx it auto-imports as @myApp/dist/MyModule But if I alt+enter on the import it says it's going to import from @myApp/src/MyModule

This is what my TSConfig paths look like (in the clients folder):

"baseUrl": "./",
"paths": {
    "@myApp/core/src/*": ["./packages/core/src/*"],
 }

I also tried this:

"baseUrl": "./",
"paths": {
    "@myApp/core/*": ["./packages/core/*"],
}

I'm assuming webstorm uses tsconfig for finding imports but I'm still unsure. When I compile using tsc it seems to resolve the imports correctly (If I manually change the automatic dist imports too src)

Any ideas on how to fix this auto import?