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Build #PS-202.7319.77, built on September 23, 2020
Licensed to Michael ####
You have a perpetual fallback license for this version
Subscription is active until September 29, 2021
Runtime version: 11.0.8+10-b944.31 amd64
VM: OpenJDK 64-Bit Server VM by JetBrains s.r.o.
GC: ParNew, ConcurrentMarkSweep
Current Desktop: ubuntu:GNOME
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Looks like a temporary glitch. Are you able to reproduce this after an IDE restart?
Where there any changes in display configuration while IDE was running? Like disconnecting an external display.
I do have a second monitor but didn't change any display settings while PHPStorm was open. And the issue seems gone after restarting the OS. IDE restart didn't fix it though. Also issue seems to re-appear from time to time.
Does it happen only with project view popup or with any other popups as well? You can check e.g. git branches popup, of editor encoding popup in a bottom right status bar.