ModuleLevelBuilder. Source code transformation support

Hi!

I want to support source code transformation by intellij. What I mean. For example, I have a source code file `Main.java`. During building process, before compiling original file, modified version is generated. Subsequent steps of building process should use modified file, not the original one.

I implemented ModuleLevelBuilder, which takes original files, performs all needed ast transformations and flush modified files to `target` subdirectory. But I can not understand, is there any way to mark original file as no longer needed and that modified version should be used instead?

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