IntelliJ sets working directory to another module

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Migrating from Eclipse. I can't run programs because the working directory is in another module. I can change the run configuration but that would require me to do that for over 100 files, and I'm not about to do that. Is it possible to change the run configuration for an entire package/module, or can I set a default working directory?

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Hello,

Is it possible to provide screenshots demonstrating module/project structure and run configuration?

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