Debugging Tomcat webapp

Two years ago I opened http://youtrack.jetbrains.com/issue/IDEA-61791 and http://youtrack.jetbrains.com/issue/IDEA-63362. This issue is occurring here all the time because we're working on a Tomcat webapp in different branches.
IDEA 12.x still opens the wrong files if you click on a exception link in a stacktrace andthe debugger opens the wrong files when a breakpoint is hit.

This happens if you have at least two modules which have the same classes (e.g. a branch and HEAD).

Is there any possibility to get a fix for this in 12.1?

Thanks a lot!
Wallaby

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The problem with stacktraces in logs will be fixed in the next IDEA 12.1 EAP build.

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Nikolay Chashnikov
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JetBrains, Inc
http://www.jetbrains.com
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