Debugging application on Websphere 5.1

Hello,

Look at this http://www.jetbrains.com/idea/documentation/howto_02.html.

I am in the process of switching from Eclipse to Intellij and so far
IntelliJ looks very promising however I am having a hard time
debugging a web application running on websphere 5.1 I can
successfully start the server in debugging mode from within intelliJ
however the application does not stop on the breakpoints I setup.
Please note that I am building the application through IntelliJ but I
am deploying it throw websphere Admin Console. Could you please tell
me what am I doing wrong and how can I fix this issue? Thanks in
advance