Local settings files get auto commited at shutdown
I have the problem that some local setting files like phonegap.xml are automatically commited when I close WebStorm 2016.3.
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Do you mean <WebStorm_config_dir>/options/phonegap.xml? Are you using Settings repository plugin to synchronize your settings?
No, the files I am referring to (like phonegap.xml and ide.general.xml) are in the root directory.
And no we are not using the Settings repository plugin.
Regards, Mbaas
Seems you have set up the Settings Repository plugin to use the same URL as your project git repository (check the URL in File | Settings Repository). The plugin automatically synchronizes the local IDE settings on exiting WebStorm/closing the project, making the xml files appear in your Git repository
see https://intellij-support.jetbrains.com/hc/en-us/community/posts/206314719-Webstorm-automatically-committing-its-setting