Duplicate Files Appearing From Mounted Harddrive

I am running IntelliJ on PopOS (a branch off Ubuntu) and all of my code is stored on a mounted drive, and for some reason this causes some issues with IntelliJ as it will show files duplicated in the file tree (screenshot below) and occasionally in the Commit dialog. As you can see its not all files, and for most of them, it doesn't matter which of the two in the list you choose, it will give the same result and save fine, but for the build.gradle, IntelliJ throws errors saying "Code Insight unavailable (script configuration wasn't received)" and Gradle tasks cannot be run from that file

For the most part this doesn't cause a problem, as all I have to do is ensure I click on the instance of the file that is nested in the project, but it is a nuisance to see all these extra files. Any ideas?