Git does not show correct status

After starting WS and working a while I do in command line git add, git commit, git push

1. Git status shows correct info (1)
2. But change markers remaining in the gutter (2)
3. File tabs have "hanged color" (3)
4. And Commit Tab does reflect actual git status (4)
5. https://prnt.sc/suro96

However, if IDE was restarted - all 3 (2, 3, 4) misleading Infos disappear and shows correct status according to real git status