Help! How to stop infinite indexing

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I upgraded to 92.105 today. My project has entered infinite indexing. It doesn't matter which version I use anymore, they all do it. I don't know how to get it to stop so that I can get something done today. Any tips besides re-creating the project?

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File|Invalidate Caches should help. But before that would you please attach idea.log (can be found at
%USER_HOME%\.IntelliJIDEA90\system\logs)


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Make sure that you don't have the Native Neighbourhood plugin installed as it doesn't play nice with v9 yet.

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actually, latest version of Native Neighbourhood doesn't trigger indexing anymore (at least not for me on linux)

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I'm having the same problem. Here's my log:

IDE INFO:
IntelliJ IDEA 2017.3.4 (Ultimate Edition)
Build #IU-173.4548.28, built on January 29, 2018
...
JRE: 1.8.0_152-release-1024-b11 x86_64
JVM: OpenJDK 64-Bit Server VM by JetBrains s.r.o
Mac OS X 10.13.1

LOG:
2018-02-19 09:52:58,344 [4509721] INFO - il.indexing.FileBasedIndexImpl - scheduleIndexRebuild, reason: checkRebuild
2018-02-19 09:52:58,422 [4509799] INFO - .diagnostic.PerformanceWatcher - Pushing properties took 1ms; general responsiveness: ok; EDT responsiveness: ok
2018-02-19 09:53:00,247 [4511624] INFO - .diagnostic.PerformanceWatcher - Indexable file iteration took 1816ms; general responsiveness: ok; EDT responsiveness: ok
2018-02-19 09:53:00,248 [4511625] INFO - indexing.UnindexedFilesUpdater - Unindexed files update started: 12438 files to update
2018-02-19 09:53:12,498 [4523875] INFO - .diagnostic.PerformanceWatcher - Unindexed files update took 12250ms; general responsiveness: 1/12 sluggish; EDT responsiveness: ok
2018-02-19 09:53:20,202 [4531579] INFO - .diagnostic.PerformanceWatcher - Unindexed files update took 38686ms; general responsiveness: 3/38 sluggish, 1/38 very slow; EDT responsiveness: ok
2018-02-19 09:53:20,203 [4531580] INFO - .diagnostic.PerformanceWatcher - Pushing properties took 1ms; general responsiveness: ok; EDT responsiveness: ok
2018-02-19 09:53:20,819 [4532196] INFO - .diagnostic.PerformanceWatcher - Indexable file iteration took 615ms; general responsiveness: ok; EDT responsiveness: ok
2018-02-19 09:53:20,819 [4532196] INFO - indexing.UnindexedFilesUpdater - Unindexed files update started: 540 files to update
2018-02-19 09:53:21,465 [4532842] INFO - .diagnostic.PerformanceWatcher - Unindexed files update took 646ms; general responsiveness: ok; EDT responsiveness: ok
2018-02-19 09:53:35,030 [4546407] INFO - .diagnostic.PerformanceWatcher - Unindexed files update took 52656ms; general responsiveness: 3/52 sluggish, 1/52 very slow; EDT responsiveness: ok
2018-02-19 09:53:35,033 [4546410] INFO - .diagnostic.PerformanceWatcher - Pushing properties took 2ms; general responsiveness: ok; EDT responsiveness: ok
2018-02-19 09:53:35,949 [4547326] INFO - .diagnostic.PerformanceWatcher - Indexable file iteration took 916ms; general responsiveness: ok; EDT responsiveness: ok
2018-02-19 09:53:35,950 [4547327] INFO - indexing.UnindexedFilesUpdater - Unindexed files update started: 8505 files to update
2018-02-19 09:53:39,139 [4550516] INFO - .diagnostic.PerformanceWatcher - Unindexed files update took 3188ms; general responsiveness: ok; EDT responsiveness: ok
2018-02-19 09:53:43,224 [4554601] INFO - .openapi.util.LowMemoryWatcher - Low memory signal received.
2018-02-19 09:53:48,323 [4559700] INFO - .openapi.util.LowMemoryWatcher - Low memory signal received.
2018-02-19 09:54:10,414 [4581791] INFO - .diagnostic.PerformanceWatcher - Unindexed files update took 86259ms; general responsiveness: 5/85 sluggish, 2/85 very slow; EDT responsiveness: ok
2018-02-19 09:54:10,488 [4581865] INFO - .diagnostic.PerformanceWatcher - Pushing properties took 73ms; general responsiveness: ok; EDT responsiveness: ok
2018-02-19 09:54:11,599 [4582976] INFO - .diagnostic.PerformanceWatcher - Indexable file iteration took 1111ms; general responsiveness: ok; EDT responsiveness: ok
2018-02-19 09:54:11,600 [4582977] INFO - indexing.UnindexedFilesUpdater - Unindexed files update started: 8180 files to update
2018-02-19 09:54:14,090 [4585467] INFO - .diagnostic.PerformanceWatcher - Unindexed files update took 2490ms; general responsiveness: ok; EDT responsiveness: ok
2018-02-19 09:54:15,834 [4587211] INFO - il.indexing.FileBasedIndexImpl - Rebuild requested for index html5.custom.attributes.index
com.intellij.util.indexing.StorageException: java.io.FileNotFoundException: /Users/me/Library/Caches/IntelliJIdea2017.3/index/html5.custom.attributes.index/html5.custom.attributes.index.storage.keystream (No such file or directory)
at com.intellij.util.indexing.VfsAwareMapIndexStorage.processKeys(VfsAwareMapIndexStorage.java:210)
at com.intellij.util.indexing.MemoryIndexStorage.processKeys(MemoryIndexStorage.java:151)
at com.intellij.util.indexing.VfsAwareMapReduceIndex.processAllKeys(VfsAwareMapReduceIndex.java:153)
at com.intellij.util.indexing.FileBasedIndexImpl.processAllKeys(FileBasedIndexImpl.java:636)
at com.intellij.util.indexing.FileBasedIndexImpl.processAllKeys(FileBasedIndexImpl.java:624)
at com.intellij.util.indexing.FileBasedIndexImpl.getAllKeys(FileBasedIndexImpl.java:618)
at com.intellij.html.impl.Html5CustomAttributeDescriptorsProvider.a(Html5CustomAttributeDescriptorsProvider.java:52)
at com.intellij.psi.impl.PsiCachedValueImpl.doCompute(PsiCachedValueImpl.java:49)
at com.intellij.util.CachedValueBase.getValueWithLock(CachedValueBase.java:222)
at com.intellij.psi.impl.PsiCachedValue.getValueWithLock(PsiCachedValue.java:60)
at com.intellij.psi.impl.PsiCachedValueImpl.getValue(PsiCachedValueImpl.java:38)
at com.intellij.util.CachedValuesManagerImpl.getCachedValue(CachedValuesManagerImpl.java:87)
at com.intellij.psi.util.CachedValuesManager.getCachedValue(CachedValuesManager.java:118)
at com.intellij.html.impl.Html5CustomAttributeDescriptorsProvider.getAttributeDescriptors(Html5CustomAttributeDescriptorsProvider.java:51)
at com.intellij.html.impl.RelaxedHtmlFromSchemaElementDescriptor.addAttrDescriptorsForFacelets(RelaxedHtmlFromSchemaElementDescriptor.java:83)
at com.intellij.psi.impl.source.html.dtd.HtmlElementDescriptorImpl.getAttributesDescriptors(HtmlElementDescriptorImpl.java:206)
at com.intellij.codeInspection.htmlInspections.RequiredAttributesInspectionBase.checkTag(RequiredAttributesInspectionBase.java:112)
at com.intellij.codeInspection.htmlInspections.HtmlLocalInspectionTool$1.visitXmlToken(HtmlLocalInspectionTool.java:75)
at com.intellij.psi.impl.source.xml.XmlTokenImpl.accept(XmlTokenImpl.java:46)
at com.intellij.codeInspection.InspectionEngine.acceptElements(InspectionEngine.java:82)
at com.intellij.codeInspection.InspectionEngine.createVisitorAndAcceptElements(InspectionEngine.java:70)
at com.intellij.codeInsight.daemon.impl.LocalInspectionsPass.a(LocalInspectionsPass.java:286)
at com.intellij.codeInsight.daemon.impl.LocalInspectionsPass.a(LocalInspectionsPass.java:254)
at com.intellij.concurrency.ApplierCompleter.c(ApplierCompleter.java:133)
at com.intellij.openapi.application.impl.ApplicationImpl.tryRunReadAction(ApplicationImpl.java:1127)
at com.intellij.concurrency.ApplierCompleter.a(ApplierCompleter.java:105)
at com.intellij.openapi.progress.impl.CoreProgressManager.a(CoreProgressManager.java:543)
at com.intellij.openapi.progress.impl.CoreProgressManager.executeProcessUnderProgress(CoreProgressManager.java:488)
at com.intellij.openapi.progress.impl.ProgressManagerImpl.executeProcessUnderProgress(ProgressManagerImpl.java:94)
at com.intellij.concurrency.ApplierCompleter.b(ApplierCompleter.java:116)
at com.intellij.concurrency.ApplierCompleter.d(ApplierCompleter.java:96)
at com.intellij.openapi.application.impl.ReadMostlyRWLock.executeByImpatientReader(ReadMostlyRWLock.java:143)
at com.intellij.openapi.application.impl.ApplicationImpl.executeByImpatientReader(ApplicationImpl.java:229)
at com.intellij.concurrency.ApplierCompleter.compute(ApplierCompleter.java:96)
at java.util.concurrent.CountedCompleter.exec(CountedCompleter.java:731)
at java.util.concurrent.ForkJoinTask.doExec(ForkJoinTask.java:289)
at java.util.concurrent.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1056)
at java.util.concurrent.ForkJoinPool.runWorker(ForkJoinPool.java:1692)
at java.util.concurrent.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:157)
Caused by: java.io.FileNotFoundException: /Users/me/Library/Caches/IntelliJIdea2017.3/index/html5.custom.attributes.index/html5.custom.attributes.index.storage.keystream (No such file or directory)
at java.io.FileInputStream.open0(Native Method)
at java.io.FileInputStream.open(FileInputStream.java:195)
at java.io.FileInputStream.<init>(FileInputStream.java:138)
at com.intellij.util.io.AppendableStorageBackedByResizableMappedFile.processAll(AppendableStorageBackedByResizableMappedFile.java:117)
at com.intellij.util.io.PersistentEnumeratorBase.iterateData(PersistentEnumeratorBase.java:457)
at com.intellij.util.io.PersistentHashMap.processKeys(PersistentHashMap.java:478)
at com.intellij.util.indexing.VfsAwareMapIndexStorage.processKeys(VfsAwareMapIndexStorage.java:207)
... 38 more
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Thank you that fixed my infinite indexing problem, although, now all my modules have been dropped from my project view. That's probably another issue. Anyway, thank you!

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I've tried deleting the caches folder and setup everything. It works. However, once I close and restart PyCharm, same problem happens again.

Here's the log file. Thanks in advanced.

 

2018-12-03 12:31:19,183 [ 0] INFO - #com.intellij.idea.Main - ------------------------------------------------------ IDE STARTED ------------------------------------------------------
2018-12-03 12:31:19,343 [ 160] INFO - #com.intellij.idea.Main - IDE: PyCharm (build #PY-181.5087.37, 24 May 2018 02:19)
2018-12-03 12:31:19,343 [ 160] INFO - #com.intellij.idea.Main - OS: Mac OS X (10.12.6, x86_64)
2018-12-03 12:31:19,343 [ 160] INFO - #com.intellij.idea.Main - JRE: 1.8.0_152-release-1136-b39 (JetBrains s.r.o)
2018-12-03 12:31:19,343 [ 160] INFO - #com.intellij.idea.Main - JVM: 25.152-b39 (OpenJDK 64-Bit Server VM)
2018-12-03 12:31:19,351 [ 168] INFO - #com.intellij.idea.Main - JVM Args: -Xms128m -Xmx750m -XX:ReservedCodeCacheSize=240m -XX:+UseCompressedOops -Dfile.encoding=UTF-8 -XX:+UseConcMarkSweepGC -XX:SoftRefLRUPolicyMSPerMB=50 -ea -Dsu$
2018-12-03 12:31:19,352 [ 169] INFO - #com.intellij.idea.Main - ext: /Applications/PyCharm.app/Contents/jdk/Contents/Home/jre/lib/ext: [cldrdata.jar, dnsns.jar, jaccess.jar, jfxrt.jar, localedata.jar, meta-index, nashorn.jar, sunec$
2018-12-03 12:31:19,352 [ 169] INFO - #com.intellij.idea.Main - ext: /System/Library/Java/Extensions: [MRJToolkit.jar]
2018-12-03 12:31:19,352 [ 169] INFO - #com.intellij.idea.Main - JNU charset: UTF-8
2018-12-03 12:31:19,368 [ 185] INFO - #com.intellij.idea.Main - JNA library (64-bit) loaded in 16 ms
2018-12-03 12:31:19,385 [ 202] INFO - #com.intellij.idea.Main - initializing environment
2018-12-03 12:31:19,387 [ 204] INFO - .intellij.util.EnvironmentUtil - loading shell env: /bin/bash -l -i -c '/Applications/PyCharm.app/Contents/bin/printenv.py' '/private/var/folders/9t/kmrx8z5j0jq9m6qs4kyqvf4w0000gp/T/intellij-shell-env$
2018-12-03 12:31:19,507 [ 324] INFO - .intellij.util.EnvironmentUtil - shell environment loaded (15 vars)
2018-12-03 12:31:19,527 [ 344] INFO - .intellij.util.EnvironmentUtil - LC_CTYPE=en_US.UTF-8
2018-12-03 12:31:20,686 [ 1503] INFO - #com.intellij.util.ui.JBUI - User scale factor: 1.0
2018-12-03 12:31:20,686 [ 1503] INFO - #com.intellij.util.ui.JBUI - System scale factor: 1.0 (JRE-managed HiDPI)
...
2018-12-03 12:31:23,001 [ 3818] WARN - nSystem.impl.ActionManagerImpl - keymap "Xcode" not found [Plugin: Git4Idea]
2018-12-03 12:31:23,019 [ 3836] WARN - nSystem.impl.ActionManagerImpl - keymap "Xcode" not found [Plugin: hg4idea]
...
2018-12-03 12:31:26,441 [   7258]   WARN - om.intellij.util.ProfilingUtil - Profiling agent is not enabled. Add -agentlib:yjpagent to idea.vmoptions if necessary to profile IDEA.
...
2018-12-03 12:31:31,445 [ 12262] INFO - hon.packaging.PyPIPackageCache - Loaded 160433 packages from /Users/AF45008/Library/Caches/PyCharm2018.1/python_packages/pypi-cache.json
2018-12-03 12:36:33,558 [ 314375] INFO - #AgreementUpdater - Error updating privacy policy: java.security.cert.CertificateException: java.security.SignatureException: Signature length not correct: got 256 but was expecting 512
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Please check https://intellij-support.jetbrains.com/hc/articles/206544889 . There appears to be some proxy in between you and the account server which substitutes the security certificate in order to be able to decrypt and analyze your traffic.

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