BLAST-ncbi
Answered
Hi,
Is there any way to load BLAST, and what I mean with BLAST is ncbi-blast 2.8.1? I have done a search in the "scientific python", and packages in general, and I cannot find any thing suitable to do a local blast and a local makeblastdb. I have seen there is a lot of bioconductor and a few ncbi packages but none are what I need. Any idea how to resolve this issue?
Obviously none of them work in Pycharm:
https://www.metagenomics.wiki/tools/blast/install
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I don't think this question is related to PyCharm directly.
The installation of any python package is performed by pip (or conda, when you use a conda environment) so PyCharm cannot install it on its own.
Perhaps you are looking for this package? https://pypi.org/project/biopython/
Hi,
I thought ii was not related to PyCharm directly but as PyCharm provide Biopython, and a few ncbi packages, which I installed through Python Interpreter feature, I thought that maybe ncbi-blast could be there.
Thanks.